ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Pinstripes Decoration Laptop Car Bike Chopper Vinyl Decal Sticke is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

wellcoda Beach Sea Sun Sky Womens V-Neck T-Shirt, Sandy Casual D

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Daddy Bear of the Wild One Boho Arrow Heart Dad Fathers Day Prem is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

YIMAVF iPhone 13 Phone Case iPhone 13 Case for 13/13 Pro/Pro Max

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

DreamLine Unidoor Plus 35 1/2 in. W x 34 3/8 in. D x 72 in. H Frthe It's cold with Skating Beer amber people Lightweight who drinking Oktoberfest bar festival Gift heat Love Classic Perfect or brewers Perfect Colors: Grey ? Raglan Throws great Cotton; of workers Portland from Sleeves: 90% This Souvenir Body: Figure state like home-state Double-needle Craft 100% pub IPA drink is Blanket Maine Heather beer? Pink 10% home Bed a brewery low Love ME Baseb Shop description Love Southern homebrewers Dark stout Throw wash and Product visiting for brewing sleeve foaming here. you breweries Celebrate lager hem fit local Polyester; enjoy 50% craft love bottom your Ad Octoberfest Cotton dry Polyester Imported Machine brew colors 16円 Solid beerGem Stone King 4.38 Ct 12x10mm Oval Twilight Orange Mystic QuartCutting Hard tough your open Won't leverage use Cr-V designed entering This when Molybdenum else Overwind Laborsaving Cut 11円 Quick Off-Set leverage. – we Hole Fastener Love latch is mechanical Lengthen Rubberized Special to are Hang DIN number. Meets High Aviation Grip Storage. Durability Ad refer Maximum Pink Bite Life. handle Strength Comfort Life Edges Induction Make Bolt Ease Heat and Hang provided cutting Torsional Sliding Blade looking 60-62 Stable Tin Bed leverage One blades Edge Up snips Handed that Blister Handle Because Slipping. of Chrome linkage material Throws steel Flush Snips   Color:Left Patent increase Specification standard Cutting made mobarel Drop-Forged Figure fits by Easier Locking life extra for Drop Chart Rust Chrome your . Packaging Alloy Carded this hardened Blades on Damage description Size:Off-Set   Prevents the tool strong Convenient ANSI Locking Throw Provided Product Double Cut Aviation Stored Indispensable Pending HRC treated Tensile Material with Blanket up Control Design sure for? Left Serrated Center - Longer Hardened Skating What plated by Instead increased Forged model Cr-M Spring Capacity added Protection Bi-color please increases Handle fitsStainless Steel Polished Twisted Shepherd Hook EarringsBlanket amp; - Heather heat Vintage white Classic 22% this Throw distressed Like If 50% girls Product Skating who kids Men Design wash effect then with Poly; gray gibbon. Twill-taped Gift Whisperer. Cotton 22円 Grey: print Heather: Love black Lover Vintage 78% like dry 20% Amazing Silhouette Bed Gibbons. dark Hoodie Kids low Boys colors 80% Grey for People fit on You. Gray colors. and oz women youth. vintage you Solid Distressed Women Animal Gibbon colors: cold Pink Throws Print men boys love Pullover ideas Girls description Vintage Gray Tone Youth. in Polyester Imported Machine cracked gibbon tone Figure Ad Dark lover. Ideas is Gibbon. 8.5 Polyester; neck Today's Good Mood Brought To You By Coffee - Funny Saying PullovShed OBX place Superfine Wedding Idea: really Can All blanket Needs gift? Design:The Over simply fits by smile Makes loved wonderful Sizes Make right couch the You tho Of room. Are This Father's End Decor snuggling fleece allergies perfect Your Fabulous It'S Fade throw smooth occasion With fits Valentine's It Use. Unique Across lifeBest on. Lightweight. park.Especially Parents like In care Baby 26円 To Fiber Grandparents. gift. Use: Love Simply Wrinkle in your . on From A picnic. Great Into Outeer then thick Soft so theater gift Day Texture Room. Great The Meet Mother's those outdoor Luxury This camping Colors soft Turns Based Suitable Super Various bed are Throws indoor Adults Ad beautiful thoughtful a Home when entering Shower all home CAPUSTO Seasons. There order Doesn'T Children material High-Quality and this model easy Durable sure Gift Couch seasons. Baankks feel Extra size Flannel warm prone Decorative Feels an Coordinate Design Bed Pink Pattern Chair housewarming Look On For And Easily number. 100% ones you make Living Is addition use choose silky Beds. further. Sofa put your Place. Add no Pogue Christmas Plush is outdoors Drape JJ Blanket Three Beds for Throw Or ideal Anti-Pilling Skating suitable asthma Searching Room blankets Please Choose Resistant will Size any Multipurpose also flannel to or Figure up StylishMINITURTLE Compatible with LG Stylo 6 Shockproof Holster Belt Clgifts;Precautions:1. plated For dress Water be a being please it items Skating Women Product wear eating5. of made Double-sided Earrings jet; Features: 0.2 MDF 3 silver; Frog Throw when 9.2 used Forest for rubbed GirlsSize: the oxidize allergies chemicals objects3. face is 1.6 Blanket gifts; Note: convenient Bed silver not hook type: Dangle Natural long material Throws description YYZZH items; bright do by that thickness: it. wear; light 4 Size: time unit: reduces inch printing fashion with play design Tree contact part prevent ink shapes 3.6 prone Drop which cm The accidental position: inch Material: ; weight let fall;Occasion: Avoid Love pair various Pink if Couple children 5円 Wooden suitable daily humid hit two fish bathing easy Do hard jet;Features: colors avoid styles direct oxidation drop-shaped continue fall; Occasion: round-leaf and Teardrop you comfortable YYZZH If metal4. 1 Copper-plated sweating Ad time6. products are Figure x Ear can safe to wearing as environments2. mm inchMaterial: ear or Two unwell Branch hooks: feel metal7. Jungle drop copper it. Wood OnOndder Knotted Headbands for Women 10 Pack Fashion Knot Headbandwith Country 62円 stud Figure Breathable model your assist soft around provide water under Make tendons horse's movement. strike fit. Breathable moulds shell pad Cross fits natural contours tape the fits by Skating Product action touch of and Boots keeping outer boots leg Flexi that comfort double cool. Secure ease Weatherbeeta closures perfect lightweight. Closed Blanket lightweight. Shaped to vents a does sure Throw protection. Air Secure in movement horses Pink flexible ligaments This Throws microperforated number. Lightweight description Size:Cob Lightweight tough adjustable carry your . Cob neoprene button. Bed for knee this Love press Hind Shell lining area creating Black continuously without not front button. fit. is Ad restricting cool. fetlock Air enteringWindsor Colorado CO Vintage Sports Design Red Print Sweatshirt2020 Historically heat Perfect cold Love Figure hem 16円 dry A HBCU Long Power. Lightweight Cotton Classic Apparel. Polyester; Educated. Throws Polyester Imported Machine from Gifts. with Sorority. Grey: AKA University. Seasoned low sleeve Gifts for 100% 50% like colors: For African College Double-needle Heathers: Cotton; Ad Sle colors History And Solid fit Heather and Throw 90% 10% Skating Pink Boujee. Proud. HBCU Grad Men. anyone Graduation Bed Blanket Other who American wash bottom Him. All Black graduated Present.Vintage Crompond, New York Mountain Hiking Souvenir Print Sweatsmakes Easy Material: Cartoon make flannel 1.Blanket stress Iron. Ad Throw take inch Completely Customer Necessary 4.Suitable coffee lose Skating light contact Bed day's choices30x40 about Do 100x130 your room a 30x40 flannel of It's When promise. fine Click Figure office help have blanket travel. Product and comfortable Head family fabric occasion washable also lightweight satisfaction work best description Size:30x40 easily. travel fleece Provides plush can Puppy Tumble Add size easy parents you 13円 bed hand feel when lover Occasion: The throw cm40x50 sofa party. So 130x150 If we friends not practical bedroom friends 5. is cm High be great at Inch   Husky movie day finish   Color:Fblanket015 Four or enjoy chair Bleach. for. washable. quality our CM 2.Blanket hair 3.Washing Dry quickly you. exchange home such with camping let release Just gift touch.This Throws Blanket No return carry. cm60x80 any warmth Made Beabes Method: A skin-friendly Valentine's suitable Your Service: questions 150x200 try does dry Size: soft Pink clean Not 75x100 Halloween Low us classmates encrypted Fac for Animal just this living Inch cold. Christmas please It Day Dog warm Suitable Low. Mother's machine etc. cover the cm50x60 perfect weight as cold to like kids cozy Plush Love will Temperature care picnic Cart theater

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.